Embryo biopsies for genomic selection in tropical dairy cattle
Clara Slade Oliveira; Luiz Sergio Almeida Camargo; Marcos Vinicius Gualberto Barbosa da Silva; Naiara Zoccal Saraiva; Carolina Capobiango Quintão; Marco Antonio Machado
Abstract
Keywords
References
ABCZ [homepage on the Internet]. Uberaba: ABCZ; 2023. Estatísticas; 2023 [cited 2023 May 2]. Available from: www.abcz.org.br/produtos-e-servicos/area-tecnica/registro-genealogico/estatisticas
Agrawala PL, Wagner VA, Geldermann H. Sex determination and milk protein genotyping of preimplantation stage bovine embryos using multiplex PCR. Theriogenology. 1992;38(5):969-78.
Angel-Velez D, De Coster T, Azari-Dolatabad N, Fernández-Montoro A, Benedetti C, Pavani K, Van Soom A, Bogado Pascottini O, Smits K. Embryo morphokinetics derived from fresh and vitrified bovine oocytes predict blastocyst development and nuclear abnormalities. Sci Rep. 2023;13(1):4765.
Assis AC No, Pereira FTV, Santos TC, Ambrosio CE, Leiser R, Miglino MA. Morpho-physical recording of bovine conceptus (Bos indicus) and placenta from Days 20 to 70 of pregnancy. Reprod Domest Anim. 2010;45(5):760-72.
Balvís NF, Garcia-Martinez S, Pérez-Cerezales S, Ivanova E, Gomez-Redondo I, Hamdi M, Rizos D, Coy P, Kelsey G, Gutierrez-Adan A. Cultured bovine embryo biopsy conserves methylation marks from original embryo. Biol Reprod. 2017;97(2):189-96.
Barad DH. PGT-A “perfect” is the enemy of good. J Assist Reprod Genet. 2023;40(1):151-2.
Barker DL, Hansen MST, Faraqi AF, Giannola D, Irsula IR, Lasken RS, Latterick M, Markavov V, Oliphant A, Pinter JH, Shen R, Sleptsova I, Ziehler W, Lai E. Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel. Genome Res. 2004;14(5):901-7.
Boichard D, Chung H, Dassonneville R, David X, Eggen A, Fritz S, Gietzen KJ, Hayes BJ, Lawley CT, Sonstegard TS, van Tassell CP, VanRaden PM, Viaud-Martinez KA, Wiggans GR, Bovine LD Consortium. Design of a bovine low-density snp array optimized for imputation. PLoS One. 2012;7(3):e34130.
Boison SA, Utsunomiya ATH, Santos DJA, Neves HHR, Carvalheiro R, Mészáros G, Utsunomiya YT, do Carmo AS, Verneque RS, Machado MA, Panetto JCC, Garcia JF, Sölkner J, da Silva MVGB. Accuracy of genomic predictions in Gyr (Bos indicus) dairy cattle. J Dairy Sci. 2017;100(7):5479-90.
Bondioli KR, Ellis SB, Pryor JH, Williams MW, Harpold MM. The use of male-specific chromosomal DNA fragments to determine the sex of bovine preimplantation embryos. Theriogenology. 1989;31(1):95-104.
Bouwman AC, Mullaart E. Screening of in vitro-produced cattle embryos to assess incidence and characteristics of unbalanced chromosomal aberrations. JDS Communications. 2023;4(2):101-5.
Bredbacka P. Recent developments in embryo sexing and its field application. Reprod Nutr Dev. 1998;38(6):605-13.
Camargo LSA, Quintão CC, Freitas C, Oliveira CS. [serial on the Internet]. Juiz de Fora: EMBRAPA; 2018. Biopsia Embrionária Manual; 2018. Comunicado Técnico; 90 [cited 2023 May 2]. Available from:
Carbonneau G, Morin N, Durocher J, Bousquet D. Viability of bovine ivf embryos biopsied with microsection or microaspiration technique for sexing. Theriogenology. 1997;47(1):266.
Cenariu M, Pall E, Cernea C, Groza I. Evaluation of bovine embryo biopsy techniques according to their ability to preserve embryo viability. J Biomed Biotechnol. 2012;2012:541384.
Chrenek P, Boulanger L, Heyman Y, Uhrin P, Laurincik J, Bulla J, Renard JP. Sexing and multiple genotype analysis from a single cell of bovine embryo. Theriogenology. 2001;55(5):1071-81.
Dean FB, Hosono S, Fang L, Wu X, Faruqi AF, Bray-Ward P, Sun Z, Zong Q, Du Y, Du J, Driscoll M, Song W, Kingsmore SF, Egholm M, Lasken RS. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA. 2002;99(8):5261-6.
El-Sayed A, Hoelker M, Rings F, Salilew D, Jennen D, Tholen E, Sirard MA, Schellander K, Tesfaye D. Large-scale transcriptional analysis of bovine embryo biopsies in relation to pregnancy success after transfer to recipients. Physiol Genomics. 2006;28:84-96.
Fujii T, Naito A, Hirayama H, Kashima M, Yoshino H, Hanamure T, Domon Y, Hayakawa H, Watanabe T, Moriyasu S, Kageyama S. Potential of preimplantation genomic selection for carcass traits in Japanese Black cattle. J Reprod Dev. 2019;65(3):251-8.
Gardner RL, Edwards RG. Control of the sex ratio at full term in the rabbit by transferring sexed blastocysts. Nature. 1968;218(5139):346-9.
Gonçalves GVB, Vaz RZ, Vaz FN, Mendonça FS, Fontoura JAS Jr, Castilho EM. 2017. Análise de custos, receitas e ponto de equilíbrio dos sistemas de produção de bezerros no Rio Grande do Sul. Cien Anim Bras. 18(1-17):e-46329.
González-Rodríguez N, Martínez-Rodero I, Scherzer J, Jung S, Reichenbach M, Zablotski Y, Otzdorff C, Zerbe H, Mogas T. Vitrification and in-straw warming do not affect pregnancy rates of biopsied bovine embryos. Theriogenology. 2022;191:221-30.
Griffin DK, JTurner K, Silvestri G, Smith C, Dobson G, Black DH, Sinclair KD, Handyside AH. The use of Karyomapping for genomic evaluation and PGT-A of preimplantation cattle embryos: the first live-born calves. Reprod Biomed Online. 2019;38:e54-5.
Griffin DK, Ogur C. Chromosomal analysis in IVF: just how useful is it? Reproduction. 2018;156(1):F29-50.
Handyside AH, Harton GL, Mariani B, Thornhill AR, Affara N, Shaw MA, Griffin DK. Karyomapping: a universal method for genome wide analysis of genetic disease based on mapping crossovers between parental haplotypes. J Med Genet. 2010;47(10):651-8.
Handyside AH, Lesko JG, Tarín JJ, Winston RM, Hughes MR. Birth of a normal girl after in vitro fertilization and preimplantation diagnostic testing for cystic fibrosis. N Engl J Med. 1992;327(13):905-9.
Handyside AH, Lesko JG, Tarín JJ, Winston RML, Hughes MR. Birth of a normal girl after in Vitro Fertilization and preimplantation: diagnostic testing for cystic fibrosis. Obstet Gynecol Surv. 1993;48(3):170-1.
Handyside AH, Penketh RJA, Winston RML, Pattinson JK, Delhanty JDA, Tuddenham EGD. BIOPSY OF HUMAN PREIMPLANTATION EMBRYOS AND SEXING BY DNA AMPLIFICATION. Lancet. 1989;333(8634):347-9.
Hasler JF, Cardey E, Stokes JE, Bredbacka P. Nonelectrophoretic PCR-sexing of bovine embryos in a commercial environment. Theriogenology. 2002;58(8):1457-69.
Hassold T, Hunt P. To err (meiotically) is human: the genesis of human aneuploidy. Nat Rev Genet. 2001;2(4):280-91.
Hayden EC. Gene sequencing leaves the laboratory. Nature. 2013;494(7437):290-1.
Herr CM, Holt NA, Matthaei KI, Reed KC. Sex of progeny from bovine embryos sexed with a rapid Y-chromosome-detection assay. Theriogenology. 1990;33(1):247.
Hochman D, Zaron Y, Dekel L, Feldmesser E, Medrano JF, Shani M, Ron M. Multiple genotype analysis and sexing of IVF bovine embryos. Theriogenology. 1996;46(6):1063-75.
Hozé C, Fritz S, Phocas F, Boichard D, Ducrocq V, Croiseau P. Efficiency of multi-breed genomic selection for dairy cattle breeds with different sizes of reference population. J Dairy Sci. 2014;97(6):3918-29.
Humblot P, Le Bourhis D, Fritz S, Colleau JJ, Gonzalez C, Guyader Joly C, Malafosse A, Heyman Y, Amigues Y, Tissier M, Ponsart C. Reproductive technologies and genomic selection in cattle. Vet Med Int. 2010;2010:192787.
Iwasaki S, Nakahara T. Incidence of embryos with chromosomal anomalies in the inner cell mass among bovine blastocysts fertilized in vitro. Theriogenology. 1990;34(4):683-90.
King WA. Sexing embryos by cytological methods. Theriogenology. 1984;21(1):7-17.
Kucherov A, Fazzari M, Lieman H, Ball GD, Doody K, Jindal S. PGT-A is associated with reduced cumulative live birth rate in first reported IVF stimulation cycles age ≤ 40: an analysis of 133,494 autologous cycles reported to SART CORS. J Assist Reprod Genet. 2023;40(1):137-49.
Lauri A, Lazzari G, Galli C, Lagutina I, Genzini E, Braga F, Mariani P, Williams JL. Assessment of MDA efficiency for genotyping using cloned embryo biopsies. Genomics. 2013;101(1):24-9.
Le Bourhis AD, Mullaart E, Humblot P, Coppieters W, Ponsart C, Le Bourhis AD, Mullaart E, Humblot P, Coppieters W, Ponsart C. 193 Bovine embryo genotyping using a 50k single nucleotide polymorphism chip. Reprod Fertil Dev. 2010;23:197-197.
Le Bourhis D, Mullaart E, Schrooten C, Fritz S, Coppieters W, Ponsart C, Le Bourhis D, Mullaart E, Schrooten C, Fritz S, Coppieters W, Ponsart C. 135 breeding values concordance between embryos and corresponding calves. Reprod Fertil Dev. 2011;24(1):180-180.
Li Z, Wang YA, Ledger W, Edgar DH, Sullivan EA. Clinical outcomes following cryopreservation of blastocysts by vitrification or slow freezing: a population-based cohort study. Hum Reprod. 2014;29(12):2794-801.
Liang L, Wang CT, Sun X, Liu L, Li M, Witz C, Williams D, Griffith J, Skorupski J, Haddad G, Gill J, Wang WH. Identification of chromosomal errors in human preimplantation embryos with oligonucleotide DNA microarray. PLoS One. 2013;8(4):e61838.
Lopes RFF, Forell F, Oliveira ATD, Rodrigues JL. Splitting and biopsy for bovine embryo sexing under field conditions. Theriogenology. 2001;56(9):1383-92.
Marchini J, Howie B. Genotype imputation for genome-wide association studies. Nat Rev Genet. 2010;11(7):499-511.
Martins JMCL, Camargo LSA, Silva MVB, Machado MA, Reis DRL, Quintão CCR, Nogueira LAG, Oliveira CS. 2020. Quantificação do DNA e genotipagem de biópsias de embriões bovinos Gir e Girolando produzidos in vitro. Arq Bras Med Vet Zootec. 72(1):33-9.
Meuwissen THE, Hayes BJ, Goddard ME. Prediction of total genetic value using genome-wide dense marker maps. Genetics. 2001;157(4):1819-29.
Mullaart E, Wells D. Embryo biopsies for genomic selection. In: Niemann H, Wrenzycki C, editors. Animal biotechnology 2: emerging breeding technologies. Cham: Springer; 2018. p. 81-94.
Najafzadeh V, Bojsen-Møller Secher J, Pihl M, Ærenlund A, Jørgensen N, Jensen KK, Jensen MT, Fenner MF, Strøbech L, Hyttel P. Vitrification yields higher cryo-survival rate than slow freezing in biopsied bovine in vitro produced blastocysts. Theriogenology. 2021;171:44-54.
Navarro-Sánchez L, García-Pascual C, Rubio C, Simón C. Non-invasive preimplantation genetic testing for aneuploidies: an update. Reprod Biomed Online. 2022;44(5):817-28.
Ogata Y, Hidaka T, Matzushige T, Maeda T. Comparison of two biopsy methods in bovine embryos. J Adv Biol Biotechnol. 2015;2(1):16-23.
Oliveira CS, Romano Quintão CC, Freitas C, Reis Camargo AJ, Serapião RV, Almeida Camargo LS. Post implantation development reveals that biopsy procedure can segregate “healthy” from “unhealthy” bovine embryos and prevent miscarriages. Anim Reprod Sci. 2017a;184:51-8.
Oliveira CS, Silva MVGB, Quintao CC, Otto PI, Alonso RV, Feres LF, Panetto JCC, Machado MA, Camargo LSA. Imputation accuracy for genomic selection using embryo biopsy samples in Gir. Reprod Biol. 2023;23(2):100765.
Oliveira GA Jr, Chud TCS, Ventura RV, Garrick DJ, Cole JB, Munari DP, Ferraz JBS, Mullart E, DeNise S, Smith S, da Silva MVGB. Genotype imputation in a tropical crossbred dairy cattle population. J Dairy Sci. 2017b;100(12):9623-34.
Orvieto R, Shimon C, Rienstein S, Jonish-Grossman A, Shani H, Aizer A. Do human embryos have the ability of self-correction. Reprod Biol Endocrinol. 2020;18(1):98.
Peippo J, Viitala S, Virta J, Räty M, Tammiranta N, Lamminen T, Aro J, Myllymäki H, Vilkki J. Birth of correctly genotyped calves after multiplex marker detection from bovine embryo microblade biopsies. Mol Reprod Dev. 2007;74(11):1373-8.
Polisseni J, de Sá WF, Guerra MO, Machado MA, Serapião RV, de Carvalho BC, Camargo LSA, Peters VM. Post-biopsy bovine embryo viability and whole genome amplification in preimplantation genetic diagnosis. Fertil Steril. 2010;93(3):783-8.
Quintão, C.C.R., Oliveira, C.S., Freitas, C., Souza, E.D., Souza, J.F.S., Alvez, B.R., Camargo, L.S.A. Desenvolvimento, número de células totais e apoptose em embriões bovinos submetidos à biópsia manual no sétimo dia após a fecundação in vitro. In: Anais da XXX Reunião Anual da Sociedade Brasileira de Tecnologia de Embriões; 2016; Foz do Iguaçu. Jaboticabal: SBTE; 2016. p. 327-8.
Rienzi L, Gracia C, Maggiulli R, LaBarbera AR, Kaser DJ, Ubaldi FM, Vanderpoel S, Racowsky C. Oocyte, embryo and blastocyst cryopreservation in ART: systematic review and meta-analysis comparing slow-freezing versus vitrification to produce evidence for the development of global guidance. Hum Reprod Update. 2017;23(2):139-55.
Rubio C, Navarro-Sánchez L, García-Pascual CM, Ocali O, Cimadomo D, Venier W, Barroso G, Kopcow L, Bahçeci M, Kulmann MIR, López L, De la Fuente E, Navarro R, Valbuena D, Sakkas D, Rienzi L, Simón C. Multicenter prospective study of concordance between embryonic cell-free DNA and trophectoderm biopsies from 1301 human blastocysts. Am J Obstet Gynecol. 2020;223(5):751.e1-13.
Rubio I, Kuhlmann R, Agerholm I, Kirk J, Herrero J, Escribá MJ, Bellver J, Meseguer M. Limited implantation success of direct-cleaved human zygotes: a time-lapse study. Fertil Steril. 2012;98(6):1458-63.
Saadi HAS, Vigneault C, Sargolzaei M, Gagné D, Fournier É, de Montera B, Chesnais J, Blondin P, Robert C. Impact of whole-genome amplification on the reliability of pre-transfer cattle embryo breeding value estimates. BMC Genomics. 2014;15(1):889.
Saberivand A, Outteridge PM. The use of embryo genotyping in the propagation of genes involved in the immune response. Immunol Cell Biol. 1996;74(2):109-20.
Santos G, Lopes MA. CUstos de produção de fêmeas bovinas leiteiras do nascimento ao primeiro parto. Cienc Anim Bras. 2014;15(1).
Sargolzaei, M. Genotyping of bovine embryo biopsies with a high density panel for use in genomic selection. The Philippines: International Service for the Acquisition of Agri-biotech Applications (ISAAA); 2013.
Seidel GE. Brief introduction to whole-genome selection in cattle using single nucleotide polymorphisms. Reprod Fertil Dev. 2010;22(1):138-44.
Shamonki MI, Jin H, Haimowitz Z, Liu L. Proof of concept: preimplantation genetic screening without embryo biopsy through analysis of cell-free DNA in spent embryo culture media. Fertil Steril. 2016;106(6):1312-8.
Shea BF. Determining the sex of bovine embryos using polymerase chain reaction results: A six-year retrospective study. Theriogenology. 1999;51(4):841-54.
Silvestri G, Canedo-Ribeiro C, Serrano-Albal M, Labrecque R, Blondin P, Larmer SG, Marras G, Tutt DAR, Handyside AH, Farré M, Sinclair KD, Griffin DK. Preimplantation genetic testing for aneuploidy improves live birth rates with in vitro produced bovine embryos: a blind retrospective study. Cells. 2021;10(9):2284.
Sousa RV, Silva Cardoso CR, Butzke G, Dode MAN, Rumpf R, Franco MM. Biopsy of bovine embryos produced in vivo and in vitro does not affect pregnancy rates. Theriogenology. 2017;90:25-31.
Takahashi T, Inaba Y, Somfai T, Kaneda M, Geshi M, Nagai T, Manabe N. Supplementation of culture medium with class L-carnitine improves development and cryotolerance of bovine embryos produced in vitro. Reprod Fertil Dev. 2013;25(4):589-99.
Takeuchi K. Pre-implantation genetic testing: Past, present, future. Reprod Med Biol. 2021;20(1):27-40.
Thibier M, Nibart M. The sexing of bovine embryos in the field. Theriogenology. 1995;43(1):71-80.
Thompson JG, Peterson AJ. Bovine embryo culture in vitro: new developments and post-transfer consequences. Hum Reprod. 2000;15(Suppl 5):59-67.
Tominaga K. Cryopreservation and sexing of in vivo- and in vitro-produced bovine embryos for their practical use. J Reprod Dev. 2004;50(1):29-38.
Treff NR, Su J, Tao X, Northrop LE, Scott RT Jr. Single-cell whole-genome amplification technique impacts the accuracy of SNP microarray-based genotyping and copy number analyses. Mol Hum Reprod. 2011;17(6):335-43.
Tutt DAR, Passaro C, Whitworth DJ, Holland MK. Laser assisted blastomere extrusion biopsy of in vitro produced cattle embryos: a potential high throughput, minimally invasive approach for sampling pre-morula and morula stage embryos. Anim Reprod Sci. 2020;219:106546.
van Vliet RA, Verrinder Gibbins AM, Walton JS. Livestock embryo sexing: a review of current methods, with emphasis on Y-specific DNA probes. Theriogenology. 1989;32(3):421-38.
Viana JHM, 2022. 2021 Statistics of embryo production and transfer in domestic farm animals. Embryo Tech Newsl. 40(4):22-40.
Viuff D, Rickords L, Offenberg H, Hyttel P, Avery B, Greve T, Olsaker I, Williams JL, Callesen H, Thomsen PD. A high proportion of bovine blastocysts produced in vitro are mixoploid. Biol Reprod. 1999;60(6):1273-8.
Willadsen SM. Micromanipulation of embryos of the large domestic species. In: Adams CE, editor. Mammalian Egg Transfer. Boca Raton: CRC Press; 1982. p. 185-210
Wiltbank MC, Baez GM, Garcia-Guerra A, Toledo MZ, Monteiro PLJ, Melo LF, Ochoa JC, Santos JEP, Sartori R. Pivotal periods for pregnancy loss during the first trimester of gestation in lactating dairy cows. Theriogenology. 2016;86(1):239-53.
Wilton L, Williamson R, McBain J, Edgar D, Voullaire L. Birth of a healthy infant after preimplantation confirmation of euploidy by comparative genomic hybridization. N Engl J Med. 2001;345(21):1537-41.
Yin XY, Tan K, Vajta G, Jiang H, Tan YQ, Zhang CL, Chen F, Chen SP, Zhang CS, Pan XY, Gong C, Li XC, Lin CY, Gao Y, Liang Y, Yi X, Mu F, Zhao LJ, Peng HH, Xiong B, Zhang SP, Cheng DH, Lu GX, Zhang XQ, Lin G, Wang W. Massively parallel sequencing for chromosomal abnormality testing in trophectoderm cells of human blastocysts. Biol Reprod. 2013;88(3):69.
Zheng YM, Wang N, Li L, Jin F. Whole genome amplification in preimplantation genetic diagnosis. J Zhejiang Univ Sci B. 2011;12(1):1-11.
Submitted date:
05/02/2023
Accepted date:
06/21/2023
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